Gene set enrichment analysis from statistical results

Source: R/functional_analysis.R

Gene set enrichment analysis from statistical results

gseaFromStats(
  df,
  funCatList,
  rankCol,
  featCol = "feature",
  splitCol = "comparison",
  seed = 149,
  nPerm = 1000,
  ...
)

Arguments

df

Data frame with results to analyze.
funCatList

A list of character vectors with the functional categories to analyze.
rankCol

Column used to perform the pre-ranked gsea analysis.
featCol

Column used to name the rankCol values.
seed

Seed used to avoid reproducibility problems between runs.
...

Rest of arguments passed to fgseaSimple.

Value

A tidy data frame with the results.