Automatic pairwise contrast

Source: R/generic_pairwise_comparison.R

Perform the automatic pairwise comparison of matrix data using a sample information data frame column.

autoPairwiseMatrixTest(
  mat,
  sampInfo,
  groupCol,
  sep = "-",
  compName = "comparison",
  ...
)

Arguments

mat

Matrix containing data to be analyzed.
sampInfo

Sample information data frame.
groupCol

Name of the sampInfo column containing the grouping variable.
sep

Separator while creating contrasts.
compName

Name of the output column that identifies the comparison.
...

Other arguments for pairwiseMatrixTest.

Value

A data frame containing the results for all the comparisons