Add status by cutoff

Adds a "status" column to a data frame using a specific cutoff.

addStatusByCutoff(
  resDf,
  splitUpDown,
  splitCol = "logFc",
  splitMidPoint = 0,
  metricCol = "logFc",
  metricCutoff = 1,
  sigCol = "pAdj",
  sigCutoff = 0.05,
  noChangeLabel = "No change",
  statusCol = "status",
  upLabel = "Up",
  downLabel = "Down",
  sigLabel = "Significant"
)

Arguments

resDf	The data frame to annotate.
splitUpDown	Split annotation into up and down features? If TRUE, splitCol and splitMidPoint should be provided.
splitCol	If splitUpDown = TRUE, the column used to split features into up and down.
splitMidPoint	If splitUpDown = TRUE, the splitCol value considered as midpoint.
metricCol	Column containing a metric to stablish the cutoff.
metricCutoff	The metric cutoff value. Rows with an absolute metricCol value above it will be annotated.
sigCol	Column containing a significance value to stablish the cutoff.
sigCutoff	The significance cutoff value. Rows with an sigCol value below it will be annotated.
noChangeLabel	Label to be used in not annotated rows.
statusCol	Name of the status column.
upLabel	Label for up-regulated features.
downLabel	Label for down-regulated features.
sigLabel	Label for significant features. Only used if splitUpDown = FALSE.

Value

The annotated data frame.